Erich Bremer - Curriculum Vitae (work in progress)
Associate Director, Medical Informatics Department
School of Medicine, Stony Brook University
Stony Brook, New York 11794-8330
1-631-681-6228 (voice)
| Education | 1991 - M.S. in Computer & Systems Engineering, Rensselaer Polytechnic Institute, Troy, NY
1990 - B.S. in Computer & Systems Engineering, Rensselaer Polytechnic Institute, Troy, NY |
| Experience | |
| Present – 9/2006 | Associate Director, Department of Medical Informatics, Stony Brook Univeristy |
| Present - 2005 | Chair & Chief Network Engineer – Academic, Research, and Computing and Networking (ARCAN) group |
| 8/2006 - 1999 | Director of Information Technology, Dept. of Pharmacological Sciences, Stony Brook University |
| 7/2006 - 1999 | Supervising Program Analyst, Stony Brook University – Office of Scientific Affairs |
| 1993 - 1998 | Senior Program Analyst, Stony Brook University – Dept. of Pharmacological Sciences |
| Publications |
Siddhartha Basu, Erich Bremer, Chun Zhou, and Daniel F. Bogenhagen - MiGenes: a searchable interspecies database of mitochondrial proteins curated using Gene Ontology annotation, Bioinformatics (2005) |
| Acknowledgements | Dmitry O. Zharkov, Gali Golan, Rotem Gilboa, Andrea S. Fernandes, Sue Ellen Gerchman, Jadwiga H. Kycia, Robert A. Rieger, Arthur P. Grollman, and Gil Shoham "Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate" EMBO J. 2002 February 15; 21(4): 789-800. (acknowledged for work on Molecular Modeling)
Zharkov, D.O. & Grollman, A.P. MutY DNA glycosylase: base release and intermediate complex formation. Biochemistry 37 12384-12394 Adipogenesis (1998).(acknowledged for work on Molecular Modeling) |
| Conferences | 2010 - American Chemical Society (ACS) CINF - RDF Boston, MA 2010 - Conference on Semantics in Healthcare and Life Sciences (CSHALS) 2009 - Association of American Colleges (AAMC) - Boston, MA 2009 – Network-Based Information Systems (NBIS) 2009 Indianna University - Purdue University 2009 - 2009 Fourth International Conference on Digital Information Management (ICDIM) University of Michigan Ann Arbor, MI, USA 2009 – Northeastern Group on Educational Affairs (NEGEA), Hershey, PA 2009 – Virtual Worlds Conference (Enage Expo) , New York, New York 2008 – Association of American Colleges (AAMC) - San Antonio, Texas 2008 – Northeastern Group on Educational Affairs (NEGEA), Burlington, Vermont |
| Professional Activities |
2008 – present Senate sub-committee for computing and communications |
| Computing Skills | Web / Semantic Web: Resource Description Framework (RDF), RDFS, OWL, Virtuoso, Jena, Apache HTTP |
| Databases: MySQL, MS-SQL 2005/2000, 7.0, 6.5, Oracle 8iR3, Oracle 10g, TerraData | |
| Networking: NFS/NIS, SMTP, LDAP, H.323, SIP, TCP/IP, IPX/SPX, HTTP, SSH, WebDAV, Windows Update Server, Norton Anti-virus Server | |
| Networking Hardware: Cisco Catalyst 6513, 45XX, 35XX switches, Cisco Firewall FSM, ISS Proventia G1200, Nortel 450T, 350T, IBM/ISS RealSecure, various protocol analyzers | |
| Video Teleconferencing: Tandberg/Cisco Codian 4250, Tandberg/Cisco C90, C60, Tandberg/Cisco Content Management System, Tandberg/Cisco Management System | |
| Internet: Darwin Streaming Server, Shoutcast, Drupal 5-6, Second Life, Mambo/Joomla Content Management Systems, Norton Security for SMTP, CommuniGate Mail/Calendaring 4.X-5.X, Sun IMS 3.X-5.X, Sun Calendaring, Mecury Mail, Sendmail, Oracle Collaboration Suite, MS VPN | |
| Languages: Java/JDBC/CORBA, C/C++, Perl, Second Life LSL, CGI, C Shell Scripting, Borland Delphi 1 to 2006, JBuilder 1.0-2006, LISP, Object Pascal, DAP-FORTRAN, FORTRAN, MS-Visual Basic, dBase, Prolog, Assembly | |
| Operating Systems: Windows NT/2000/XP/2003/2008, Redhat Linux 6.x-9.x, RHEL 3.0-5.X, Redhat Fedora,Windows 3.1/95/98/ME, Novell 3.x, AIX, SCO UNIX, MS-DOS, VAX/VMS, MTS, OS/2, MacOS, MacOSX, IRIX, Solaris | |